SleepSight is a study that aims to detect relapse in Schizophrenia patients using a Fitbit. The NIHR Maudsley Biomedical Research Centre Bioinformatics Core has developed a real-time monitoring system in conjunction with CBITS at Northwestern University to track sleep in Schizophrenia patients with the goal of understanding the involvement of sleep in patient relapse events. Patients […]
It was front page news on the KCL website no less! http://www.kcl.ac.uk/ioppn/news/records/2014/October/Sleep-sensors-to-detect-relapse-in-schizophrenia.aspx Currently, we are testing the devices shown on the right. In order to make sense of each device’s data, all devices are worn on the same wrist of a candidate person. This enables us to compare the different outputs and pinpoints advantages and disadvantages […]
Algorithm design and strategy by Dr David Baker (Janssen). Implementation and application by Dr Steven Kiddle (KCL). For queries please contact steven.kiddle (at) kcl (dot) ac (dot) uk . Pre-processing for Relative Quantification (PRQ) of TMT tagged LC-MS data is an R script written to pre-process mass spectrometry data. It performs the following steps: […]
CohortExplorer provides a command line interface to explore clinical cohorts stored under Opal (OBiBa) ‘Opal SQL’ framework. It offers the detailed exploration of entities and varibles. CohortExplorer can be used to explore both single and multiple visit cohorts/datasources.
A pipeline for running Zcall and Opticall on Illumina Exome Chip Datasets. This workflow will handle all the file parsing and run both callers and compare the output bed files. Repository: https://github.com/KHP-Informatics/chip_gt Author: Amos Folarin Organisation: KCL/SLaM Email: firstname.lastname@example.org REQUIREMENTS 1) Sun Grid Engine 2) Zcall 3) Opticall RUNNING THE PIPELINE 1) Read notes […]
The Brain & Body Genetic Resource Exchange (BB-GRE) provides a resource for investigating the genetic basis of neurodisability. It combines phenotype information from patients with neurodevelopmental and behavioural problems with clinical genetic data, and displays this information on the human genome map.